程式語言

Programming(Python)

學期

107-1

學分

2 學分

當期課號

5708

永久課號

IBI7014

開課單位

生物資訊及系統生物研究所

授課教師

中研院國際學程

類別

選修

上課時間表

節	週五
3 10:10–11:00	程式語言 2 節連堂
4 11:10–12:00	程式語言 2 節連堂

* 根據陽明交大上課時間表所列

概述

This course introduces basic aspects of programming language and its application in bioinformatics. First, fundamental programming techniques in Python are introduced. After that, this course focuses on the practical implementation of programs to analyze various biological data. The use of existing available resources from the Internet is also incorporated. Finally, the students implement bioinformatics projects (i.e., motif finding, pattern matching, sequence alignment, biomedical database analysis, etc.)

先修科目

Some programming background is recommended Please refer to the following website for updated course information: http://tigpbp.iis.sinica.edu.tw/tigpbio/2016Fall.html#P

教學方式

1.TA: Chia-Hung Lin(林佳鴻) Email: redlin@iis.sinica.edu.tw 2.There will be assignment for each lecture, and some of the topics will be given projects. Students can expect it to be an intensive course.

評分方式

Midterm exam (25%). Final exam (30%). Homework (25%). Projects (10%). Class performance (10%).

週次計畫

週次	主題
第 1 週	Introduction to Python
第 2 週	Basic Elements of Python I
第 3 週	Basic Elements of Python II
第 4 週	Basic statements I: branching programs and inputs
第 5 週	Basic statements II: iterative programs
第 6 週	Functions: scope rules and passing arguments
第 7 週	Modules, Files, and Structured Types
第 8 週	Exception handling
第 9 週	Review week
第 10 週	Midterm exam
第 11 週	Introduction to Biopython
第 12 週	Regular expressions
第 13 週	Object-oriented programming: classes
第 14 週	Data analysis toolbox
第 15 週	Data analysis toolbox / Web programming
第 16 週	Web programming
第 17 週	Review week
第 18 週	Final exam

教科書

Introduction to Computation and Programming Using Python (revised and expanded edition) by John V. Guttag, 2013, The MIT Press (滄海圖書代理)

Office Hours

地點: by appointment
時間: by appointment
聯絡方式: BP- Dr. Wang, John; johnwang@gate.sinica.edu.tw Dr. Chang, Hui-Yin; s9258029@iis.sinica.edu.tw Dr. Mamie Lih; tsmlih@iis.sinica.edu.tw SHNCC- Dr. Wang, Chih-Yu; ywang@citi.sinica.edu.tw Dr. Wang, Chuan-Ju ; Dr. Shen, Chih-Ya; chihya@citi.sinica.edu.tw