進行中 校際選修

115-1 選課時程

進行中

  • 初選第一階段 6/15 – 6/18
  • 初選第二階段 6/22 – 6/25
  • 校際選修 8/24 – 9/18
  • 初選第三階段 8/31 – 9/3
  • 開學後加退選 9/7 – 9/21
  • 逾期加退選 9/21 – 9/24
選課資源

分子模擬

Molecular Simulation

學期
109-1
學分
3 學分
當期課號
5720
永久課號
IBI5171
開課單位
生物資訊及系統生物研究所
授課教師
尤禎祥
校區
博愛
類別
選修
上課時間表
週四
5
13:20–14:10
分子模擬
BI304
3 節連堂
6
14:20–15:10
7
15:30–16:20

* 根據陽明交大上課時間表所列

概述

Practical application of computational packages will be lectured. Graduate students will learn to perform quantum chemical simulation in the example exercises and to analyze and interpret the computational results.

教學方式

課程網站 HOMEPAGE: http://wild.life.nctu.edu.tw/class/10915720/index.html 教科書 TEXTBOOK: (1) http://www.netLibrary.com/urlapi.asp?action=summary&v=1&bookid=105483 (2) http://dx.doi.org/10.1007/978-3-540-77304-7 (3) http://140.113.39.244:2048/login?url=http://nctu.cambridge.patron.eb20.com/Collections/ViewBook/429f7294-d512-4d11-8725-2aafd641ba42

評分方式

Exercise/Homework 30% Literature report 20% Project report 30% Midterm exam(?) 20%

週次計畫
週次主題
第 1 週Basics in computational chemistry
第 2 週Graphical interface, basic UNIX commands and text editors.
第 3 週Mooncake Festival
第 4 週Introduction to software packages; Molecular structure and symmetry
第 5 週Cartesian Coordinate, Z-matrix and their combination
第 6 週Energy landscape, minimization and search of transition states
第 7 週Vibration frequencies and normal mode analysis
第 8 週Conventional molecular orbital and natural bond orbital
第 9 週Group theory and term symbol
第 10 週Electronic transition
第 11 週Mid-term exam and paper report
第 12 週Self-consistent field and density functional theories
第 13 週Perturbation theories
第 14 週Coupled cluster theories
第 15 週Multi-configuration theories
第 16 週Final exam or project presentation
第 17 週
第 18 週
教科書

(1) Computational Chemistry: Introduction to the Theory and Applications of Molecular and Quantum Mechanics, Errol Lewars, Boston Kluwer Academic Publishers, 2003. (2) Computational Chemistry and Molecular Modeling: Principles and Applications, K.I. Ramachandran et. al, Springer-Verlag GmbH, 2008. (3) Electronic Structure Calculations for Solids and Molecules : Theory and Computational Methods, Jorge Kohanoff, Leiden: Cambridge University Press, 2006. (4) Introduction to computational chemistry, F. Jensen, Wiley. (5) Exploring chemistry with electronic structure methods, 2nd Edition, J. B. Foresman and AE. Frisch, Gaussian Inc. (6) Learning the vi Editor, 6th Edition, L. Lamb and A. Robbins, OReilly.

Office Hours
地點
賢齊樓R416
時間
2EFG
聯絡方式
x56962 jsyu@mail.nctu.edu.tw