程式設計
Programming (Python)
| 節 | 週五 |
|---|---|
3 10:10–11:00 | 程式設計 2 節連堂 |
4 11:10–12:00 |
* 根據陽明交大上課時間表所列
This course introduces basic aspects of programming language and its application in bioinformatics. First, fundamental programming techniques in Python are introduced. After that, this course focuses on the practical implementation of programs to analyze various biological data. The use of existing available resources from the Internet is also incorporated. Finally, the students implement bioinformatics projects (i.e., motif finding, pattern matching, sequence alignment, biomedical database analysis, etc.)
TA(BP): Rodrigo Espinoza Silva Email: rodespinosas93@gmail.com Office hours: Tuesdays 14:00~16:00 pm Office location: Room R302-7, Institute of Statistical Sciences, Academia Sinica
Midterm exam 25%. Final exam 30%. Homework 35%. Class performance (10%)
| 週次 | 主題 |
|---|---|
| 第 1 週 | Introduction to Python |
| 第 2 週 | Holiday-Mid-Autumn Festival (no class) |
| 第 3 週 | Basic Elements of Python |
| 第 4 週 | Basic statements I: branching programs and inputs |
| 第 5 週 | Basic statements II: iterative programs |
| 第 6 週 | Functions: scope rules and passing arguments |
| 第 7 週 | Modules, Files, and Structured Types |
| 第 8 週 | Review week (no class) |
| 第 9 週 | Midterm Exam |
| 第 10 週 | Regular expressions |
| 第 11 週 | Object-oriented programming: classes |
| 第 12 週 | Introduction to Biopython |
| 第 13 週 | Data analysis toolbox: NumPy, Pandas, Matplotlib |
| 第 14 週 | Machine learning II: scikit-learn |
| 第 15 週 | Machine learning II: scikit-learn & keras |
| 第 16 週 | Review Week (no class) |
| 第 17 週 | Final Exam |
Python for Biologists: A complete programming course for beginners (Martin Jones) Advanced Python for Biologists (Martin Jones) (Reference) Python for Everybody - Exploring Data In Python 3 (Charles Russell Severance)