生物資料庫理論與實作
Biological Databases: Theories and Practice
| 節 | 週一 |
|---|---|
7 15:30–16:20 | 生物資料庫理論與實作 BI304 3 節連堂 |
8 16:30–17:20 | |
9 17:30–18:20 |
* 根據陽明交大上課時間表所列
The first part of this course aims to teach students 1. how to utilize various important biological databases without resorting to computer programming. Together with the advancement of biotechnology, lots of biological databases, including NCBI, Ensembl, UCSC genome browser, GEO, KEGG, miRbase, PDB, TCGA, 1000 Genomes, etc. Among these databases, many of them also come build-in with advanced search or analysis tools. Familiarity with those databases and properly using them will greatly benefit and ease one’s research career. The second part of this course will teach students how to build a database with python & Flask. * Several useful data processing skills built into Excel will also be included in this course.
General biology, familiar with Python
1. Handouts, 2. In-class practice
Homework (35%); class participation (30%); final project (35%)
| 週次 | 主題 |
|---|---|
| 第 1 週 | Introduction |
| 第 2 週 | Data processing with Excel (I) |
| 第 3 週 | 228 long weekend |
| 第 4 週 | Data processing with Excel (II) |
| 第 5 週 | Sequence database: NCBI |
| 第 6 週 | miRNA database:miRBase and TargetScan |
| 第 7 週 | Genome browser: UCSC genome browser |
| 第 8 週 | Qingming Festival |
| 第 9 週 | Pathway database: KEGG |
| 第 10 週 | Cancer sequencing database: TCGA, COSMIC |
| 第 11 週 | Javascript |
| 第 12 週 | CSS |
| 第 13 週 | Flask & database (I) |
| 第 14 週 | Flask & database (II) |
| 第 15 週 | Flask & database (III) |
| 第 16 週 | Flask & database (IV) |
| 第 17 週 | Final project report (I) |
| 第 18 週 | Final project report (II) |